File Format 705
for SNP Data Delivery to the Interbull Centre for the International Genomic Evaluation
NATIONAL SNP DATA
|
Starting Position |
Field Description |
Format |
Example |
|
1 |
Record type 1 |
integer 3 |
705 |
|
4 |
Country sending this information 2 |
character 3 |
AUS |
|
7 |
Breed of evaluation 3 |
character 3 |
BSW |
|
|
|
|
|
|
Animal international identification 4 |
|||
|
11 |
Breed of animal 5 |
character 3 |
BSW |
|
14 |
Country of first registration of animal 2 |
character 3 |
AUS |
|
17 |
Sex |
character 1 |
M |
|
18 |
ID number of animal 6 |
character 12 |
000000A12345 |
|
|
|
|
|
|
31 |
Number of SNP in the SNP-Chip being reported |
integer 10 |
54609 |
|
|
|
|
|
|
National SNP data 7 |
|||
|
42 |
AB – Genotype for SNP Index 1 8,9 |
integer 1 |
0 |
|
43 |
AB – Genotype for SNP Index 2 8,9 |
Integer 1 |
1 |
|
… |
AB – Genotype for SNP Index … 8,9 |
Integer 1 |
2 |
|
n+41 |
AB – Genotype for SNP Index n 8,9 |
Integer 1 |
5 |
|
|
|
|
|
-
1 Record type is always 705 for this File Format
- 2 ISO 3166-1 alpha-3 codes (3 characters, capital letters)
- 3 Breed of evaluation (3 characters, capital letters, BSW, GUE, HOL, JER, RDC, SIM)
- 4 Please see Interbull Bulletin 28.
- 5 Breed of animal (3 characters, capital letters)
- 6 Alpha-numerical, always 12 characters long
- 7 File Format 705 is an alternative for File Format 704
- 8 SNP Index from 1 to the number of SNPs based on the SNP-index files provided by Interbull
- 9 Acceptable values are according to the following table:
|
AB – Genotype |
Allele 1 – AB |
Allele 1 – AB |
Genotype call |
|
0 |
B |
B |
Assigned |
|
1 |
A |
B |
Assigned |
|
2 |
A |
A |
Assigned |
|
|
|
|
|
|
5 |
Not assigned |
Not assigned |
|
|
|
|
|
|
|
7 |
B |
B |
Imputed |
|
8 |
A |
B |
Imputed |
|
9 |
A |
A |
Imputed |
OBS : All character variables should be left adjusted, and all integer variables right adjusted.